Not exactly sure where they differ. But the most obvious thing is that Snappy has a completely different way of installing packages and its own package format, too.
HypriotOS on the other hand just uses the standard Debian way of installing and managing software.
Do you guys post the process by which you compile this image anywhere? I was very impressed the last time I saw you put out an update because I have tried in the past (as a learning excercise) to do the exact same thing. Compiling a kernel that supports docker for the pi was quite a challenge. For me, at least.
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I think it's Raspbian + hypriot kernal + Docker + other special sauce like the ability to plug a program in via a USB stick
HypriotOS on the other hand just uses the standard Debian way of installing and managing software.
Here is our repo: https://github.com/hypriot/rpi-kernel
Cheers!