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This is not a good thing, since it seems the file are still there. I still need to add them to my `.gitignore`. If they are there and I ask to see all files, I want to see them.
Like the "hide Library folder always" I hope there's some CLI command to run to override it. Not that I run with hidden files visible, but I can see why it would be useful.
A global gitignore solves that.

The file is available in the Terminal. I don't see the point of seeing a `.DS_Store` file on finder.

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Surely with Apple's new file system, the need for these files will go away, right? I'm sure they can bake whatever metadata these directories need right into the fs.
I recently tested APFS on a USB stick, "ls -A" hasn't shown any .DS_Store files.
If this means it won't appear on my desktop now, perfect!

Now, if only there's a way of displaying folders first in Finder..

"Keep folder on top when sorting by name" is finally an option in Finder on macOS 10.12 Sierra: http://d.pr/i/10yom
My prayers have been answered. Seriously though, this has been requested for ages and is so clearly a feature benefits a lot of users (even when being opt-in) while probably being easy to implement. I'm so glad they finally did.
That's great. .DS_Store was the reason why I stick with the default setting of not showing hidden files.