Ask HN: Getting started in biology with a software background
In the past few years the news around biology has been getting more exciting and frequent, between CRISPR and biotech firms working on niche drugs. I'm really interested in learning more about the skills needed to start a biotech company, but I'm lacking the masters degree in biology. What skills are actually needed to get into the field and does anyone know any good resources to learn them?
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[ 4.8 ms ] story [ 244 ms ] threadhttps://github.com/ossu/bioinformatics
https://www.amazon.com/Gene-Intimate-History-Siddhartha-Mukh...
[0] https://www.ncbi.nlm.nih.gov/pubmed/23287718
[1] https://www.amazon.com/Molecular-Biology-Cell-Bruce-Alberts/...
When a new biotech product team is getting formed get yourself on the project.
Whatever you do, don’t compete with biologists.... there’s just too many of them and the lab skills are valuable but in abundant supply.
In all seriousness, you are going to need a PhD if you want to truly understand all of the background of the field. Human biology/biochemistry is just about the most complex thing humans have ever studied. It would surely be easier to just find people with the requisite skill sets.
Even if you just want to start a company, I feel that it would be really hard to pick out a scientific direction/what your company is going to do, without a rigorous scientific background
Theranos had an excellent market fit—-people hate having blood drawn—-but the technology did not work and fundamentally could not work. The whole point of being a subject matter expert is to learn about things like that.
It’s true that there are other routes to becoming an expert in something (and proving it). A masters and a stint at a well-known company certainly works for many people; bootstrapping your own company might be an option too, but you’d need to be very successful to establish your bonafides. The advantage of a PhD is that it’s a fairly well-known quantity.
If you want to have a decent shot at getting funding from biotech VCs, the team overall needs experience in biotech AND startups, and the less experience the founder has in biotech the more the team will require to compensate for the deficiency. And vice versa for business experience, a freshly minted PhD is going to need team members with significant biotech BD experience.
A PhD or MD counts towards experience in biotech. MS + years of industry experience also counts, as would BS + many years of industry experience.
A PhD is nice because because it demonstrates deep experience in a narrow field plus an understanding of context. The context part is key. Autodidacts tend to miss out on the context, and their learned knowledge tends to be more fragile as a result, so there is a slight bias towards advanced degrees.
Insufficient experience is a hard no for biotech. Nobody wants to see another Theranos, and notably biotech VCs didn’t put any money into Theranos. We’d like to keep it that way.
> "A PhD is nice because because it demonstrates ..."
An employees willingness + investment to singularly do just one thing for the rest of their life.
It works as really good signaling for a CEO / hiring manager to assess someone as a really consistent employee.
The question is if the methods are complex. AFAIK computational biology involves statistics, statistics and statistics. The systems themselves are incredibly complex and interconnected , but the abstraction levels of the math involved are not incredibly high.
Is that the need, though? Few SaaS CEOs truly understand all the background of computer science. They do understand the problem space, but they leave it to the experts in the organization to get into the details of applying computer science to the problem.
Is biology different, where the level of expertise needs to be at a more detailed level in order to lead an organization?
How do you find info on bio topics right now?
The trick is interpreting it and putting it into context. A paper will report the results of one specific experiment, and it’s very rarely exactly what you want. Understanding how a result will generalize to other conditions is tricky, even for experts: there are tons of weird feedback loops, unusual dynamics, and other traps for the unwary (plus badly designed experiments and the occasional legit Type I error). For example, doubling the amount of a substance almost never doubles its effect, and in some cases, the effects aren’t even monotonic: ~75% alcohol, for example, is a much better disinfectant than 50 or 100%.
With time—-and lots of paper-reading, you do eventually develop a sense for what factors might matter and how you could check.
I think we need to stop this useless debate as clearly one side has often no clue about the other. This behavior has led to massive failure in my career to successfully launch IVD devices or have a successfully bioinfo software for physicians - talking from experience here.
Success in biological research is driven by the scientist's ability to sort wheat from all this chaff, and it's acquired by gathering the data themselves hands-on in wet labs. A master biologist has learned how to navigate that space experimentally and analytically using techniques they've mastered just well enough to see over the noise.
As someone with degrees in both bio and CS and 15 years of work that crosses the boundary between them, I'm decidedly more in awe of those who have mastered biology.
I think that you and a lot of people in this thread don't understand the impossibility of understanding millions of lines of code. Do you really think "computer geeks" just hold them all in their heads, and then assume that since they can do that, it must not be difficult?
No, but I think a group of geeks could. However a group of biologists cannot explain a biological system in full. When I say a computer system can be understood in full, I mean that human knowledge encompasses the working and programming of the machine, not that one person could know every detail. This is not the case for biology, as there's plenty we don't know.
> Otherwise, you could just as well say that a biological system can be understood from the atoms on up, since quantum theory provides a complete understanding.
It really doesn't provide a complete understanding for biology anymore than it does for sociology. It's not possible for humans to reductively explain such fields in terms of physics. No one can even prove this is possible. But it's not a complete understanding for physics either, since there's Relativity and questions about quantum gravity and dark energy.
Not only is documentation pretty scarce these days, but good information on the interactions between pieces of software is much scarcer, due to the exponential number of ways that it can interact.
To found a company? How do you know where to start? If you are hiring PhDs to come up with the idea for you, how do you if their ideas are novel or worthwhile?
Not to disparage SaaS founders, but I think it's somewhat easier to look about and say "there is no app for sending texts via REST API" and do that, than it is to look at say "no one has found a way to selectively target cancer cells for CRISPR" and then go do that.
We are still at a point in Biotech where companies have to do fundamentally new things with their tech to succeed. If you were starting a company that applies CRISPR to X genetic disease, you might not need a Ph D. to start the company, because you can apply existing technology to solve that problem. But that begs the question: Why has no one else done it yet?
At the end of the day, you need a unique insight to start a large company. That means experience with either the problem space or the technology space is helpful. Not discouraging OP either, if you have a vision for what the future should look like, and can acquire talent/capital... anyone can start a massive company. So OP should try to acquire that vision.
But there's no doubting that some sort of counter-intuitive or hidden insight is necessary. Even if that insight is: "people think this is obvious and not worth doing, but it actually IS worth doing." RE: Zero to One.
But its rubbish.
Speed + onus behind learning > everything.
Also note the self-serving bias where Phd's swear:
"You need a phd"
I studied Genetics and CS. What you can do instead is reach out to the PhDs and gather information from them to start getting a general sense of the direction.
This is easy some schools allow you to sit in on lectures / come to events. Most PhDs are usually off working independently though. Make friends with the competent PhDs gather info. Hack the system you don’t need a PhD you can hire one later.
This is all assuming you have the raw talent of product and can lead well, and can convince people exceptionally well, otherwise disregard.
It is important to have a fundamental understanding of biology and chemistry, and ability to critically evaluate data, but once you have that, its more important to be able to find people with the right domain expertise and have productive interviews with them about data. If you are a neuroscience PhD you should not be evaluating a cancer assay or a GLP tox study on your own, you should read enough to have a productive interview with someone with more expertise, then go have that interview
You need a rigorous science background to start a company but that is not sufficient. Many projects are just not fundable. For non scientists, id recommend learning how the industry works and how value is created, because that complements the expertise of scientists who know the science but dont know the right clinical applications
God knows they'll work for 3rd-world labor rates.
Alternatively there’s a lot of algorithm/classifier development you could jump into.
It’s usually easier going the other way though. Biology is a complex beast.
You will need two basic skills
1) The skill to understand that trying to manipulate by yourself a delicate and exquisitely calibrated machine without knowing what you do, is a bad idea.
There is a fair possibility that you end with either bad products like a method for pursuing suspects based in DNA of a chunk of cut hair (made entirely of cheratin that does not have any DNA). Incorrect biological explanations or a very expensive machine broken are also probable results
2) The skill to hire a trained biologist that will do the job
Biology is a vast field, and there is simply an enormous amount to learn. And you also need to understand the methods and techniques used to perform experiments, which can get pretty deep into physics at times, and requires a lot of very specialized knowledge for many of the more complex methods. Statistics is also important for many types of experiments.
It's really not easy and fast to gain the necessary knowledge, people in the field generally have a bachelor/master and a PhD, and that is the start of your scientific career.
I know quite a few bio/chem people working in pharma as well. That industry is booming but mostly for the people that own pharmaceutical companies not their employees. There's a reason that most biologists from good school would rather be bad data scientist that good lab workers in pharma/bio tech. The pay is much worse and pharma/bio tech don't treat there employees nearly as well as big tech companies do.
All of the interesting jobs around that space are still largely tech jobs.
yep, that's why i left the industry. the companies know that the science staff are willing to work for less, so long as they have the opportunity to do what they're interested in. so they end up working for much less.
Everyone I knew that had halfway decent programming/math skills ended up leaving eventually. The pay differential for what your skills can bring you in other industries is massive.
There's so many interesting things going on in biotech, but they're always on the horizon and are likely decades from any commercial product (synthetic bio, DNA as data storage, etc). On top of that, no one gets super rich from equity at a start-up unless you are an exec. If you're lucky and pick the right pony when it's under 30 employees and spend a decade there until a massive IPO, you'll at most get a couple 100k's. Employees in biotech are not valuable enough to get big paydays.
Also, you're likely working on products, that if successful, will help people live longer. So when you're already not paid enough to buy the cheapest home in your city, you're at best ensuring those old folks who already have homes will live longer and make your home ownership dream less likely.
[1] https://www.crunchbase.com/person/sajith-wickramasekara
If you have strong CS skills then you should:
1) Focus on bioinformatics. You will immediately be of use as far as making your own product/service or working for a startup if you apply your skills there. Most bio specialists are incredibly weak at data analysis and/or any type of computing. Pretty much all the important problems in bio are computational in nature. The "impressive" bio researchers/scientists have the data science skills of a sub-par / average data scientist / CS grad.
2) Create a home lab or find one / start one locally. Look up the odin project. Work on DIY genetic engineering and you can even take classes from that site. If you just get to this point and stop you will literally have more practical skill and knowledge than the vast majority of graduates with bio degrees.
3) Lots of biohackers experiment with themselves for clout/hype/attention. It never ends well. There are plenty of lab organisms that you can easily source and ethically experiment with.
4) Don't listen to anyone that tells you that you can't do something because you don't have a PhD. Those are the same type of people that missed out on the computing and internet revolutions because they were busy doing trivial academic work.
2) Having hands-on experience in wet labs is useful and relatively easy to learn. People can learn wet lab skills sufficient to carry out experiments (i.e. pipetting stuff together) in under a year. This is not what research is about though.
3) True
4) You don't need a PhD. But to truly succeed in biology, you need to learn things from the ground up, which takes years of studying. If you just read a few books, you will be able to understand certain parts of it, but as a founder of a biotech startup, you will be the equivalent of a tech startup founder blindly following buzzwords such as "blockchain".
What do you do after you introduced a plasmid or modified the genome of some bacteria?
Isn't that what books are for? To compile, document and share knowledge some people spent years to figure out?
I mean, by all means, try it. But life sciences are not computer science. The approach is entirely different and quality of the work you need to do is different. It looks much, much easier than it is. (Which is, on a different note, why I believe the whole pseudoscience crap such as anti-vaxxers is gaining so much traction)
Exact
1) The use of materials is totally different
Computer programming is a stuf that uses reciclable electricity and "eating your own dog food" kind programs, cheap to produce or free to copy, easily available and in many cases free except by the hardware (Hardware that can be hired, "clouded" or increased gradually).
You don't need to pay a dime for using R, C, Perl or Python and you can obtain the four, ready to use in your computer in less than a half hour. If you need a microscope, there is not an equivalent open source stuff replacement available.
In Biology the matherials will be sold to you only in packages of 10 Kg each pigment, with a caducity date, even when you would need to mix just 10 grams of each one. The spendable one-use only stuff is not free and the price for a single kit is incredible. You will pay it in any case because is indispensable for validating your work and you plan to use 500 of those kits the next year so you are a captive client from this company (that could decide to stop selling you if you try a way to lower the price, and will sue you if you try to copy the formula and make the product by yourself).
2) Documentation is not free and obtaining it is time consuming
In computer programming, you dont need to spent weeks to be delivered to you, or plan a travel to Peru to collect samples of a plant virus. You don't need to spend days just to reach the documentation navigating a miriad of closed or pay per viewed journals, at 50 dollars to peek in each paper.
You can expect to learn something and use it for years. Fortran is still there. You can program automatically your computer to make a hundred of safety copies each working day. In biology you can not clone your amazonian beetles collection, is unique and will be atacked and reduced to dust by real bugs from day one if you do not protect it.
3) There is not an obvious, linear path to success
Errors are random events that you can't always control
In biology you will lose eight months of your research because your samples travelling from Swedden to Madrid end somehow stuck in a Lithuanian airport for ten days and now are defrozen and unusable. You needed this research to assure the new funds and keep running, and now you have three months to obtain new samples, redo and fix it.
You can lose years chasing a dead end or be superseeded by a genius in some part of the planet that discovered the same as you first, or a different and better way to do it.
4) You don't just buy a lab and hire a team to create "something" nice.
Unless you are in the bussiness of teaching science you design the lab according of the exact product what you are trying to create. Any machine that you ordered and will not use enough frequently later is a hole in your presupuest. Any timed out kitt that you bought in excess quantity is your money ending in the dumpster bin.
You need to hire somebody familiar with what "hardware" is trendy and works and what machines are outdated since ten years even if you see it in each faculty and in propaganda.
There is a great opportunity at this moment, similar to the opportunity that Bill Gates and Paul Allen had. Mainframe computers were expensive, yet they found ways to practice and become highly skilled. There wasn't documentation like there is now, yet hacking culture found ways to build cool and effective stuff. Obviously there wasn't a linear path to success - people thought personal computers would never be necessary, yet Apple and Microsoft were huge successes that no one ever expected. There are people that see opportunity in fields like biotech and bioengineering, and there are people that only see the obstacles. The former create amazing things, while years later the latter are envious that they didn't have similar vision and courage.
You made my point.
I wouldn't advice to invest in the company of this guy, but is their money, not mine, so... do as you please. Honestly, I would love to hear that he became billionaire.
FWIW, the OP didn't specifically say ze wanted to do "biomedical". Biotech is bigger than just medical applications. Biotech could skew more towards materials science, or environmental engineering, or any number of areas besides "treatment for diseases in humans" or whatever.
A practical way to do this is to invest in biotech stocks. This will expose you to clinical data, the regulatory process, and how value is created and destroyed. Evaluating clinical data and unmet medical needs is the core skillset in evaluating market potential of a drug, device, diagnostic or patient-facing software
Having skin in the game will help you focus your learning. But only invest as much as you can afford to lose, treat it like tuition.
This is precisely the failure of every academic ever. We can examine this through the Theil-lens where they're trying to create a narrative of uniqueness where their research applies + revolutionizes everything ( when it does not ).
But everyone knows this is not the case. This is the central plague of all academic research, that its the pursuit of novel understanding before useful application.
I would argue that this is more a defining characteristic of the current academic pyramid scheme than biotech startups.
Biotech startups dont go out for VC unless they HAVE a market.
Biotech phds go to the NIH regardless of whether theres a market.
Uh, not all knowledge is about making products. I hope you meant "all academic research" only in context of biotech startups. And applied science is only part of the scientific endeavor, which is to understand the world, regardless of whether that can be monetized.
However a trait which is more readily attributed to academic research ( not creating a profitable product ) is more applicable to academic research than to startups.
Per the Thiel quote (summarized):
The history of academic research is riddled with scientists making no profit.
Plague of all academic research?! Isn't the point of academic research to understand before application (and quite often application is not the goal at all and that's ok)?
I get that it may seem trivial to apply something, but with high-cost risks of mistakes when they happen in biology/medicine it is not.
The pharma industry learned this the hard way: https://en.wikipedia.org/wiki/Thalidomide
It seems to me that some software engineers/computer scientist think that other fields are slow/full stupid people because the progress is not fast. Well the progress is not fast because cost to start is often huge, wetware can't be moved to cloud, stakes are higher than unhappy customers etc.
PhD process is only one path, but it has a number of useful attributes, such as being very close to the active state of the art research, feedback from experts in the field, handholding through the paper and grant process, and introduction to a large social network. Those are all very hard to do with home labs and biohacking. Things like journal clubs with other grad students often help people learn how to evaluate the literature with the appropriate context. Independent work is important, but teamwork and learning from others is far more important.
I've worked with some very smart people (famous software engineers with long track records of innovation) that wanted to help with bioinformatics, and they did do some cool things, but their lack of deep context (the sort of thing you can get from a PhD program or working in the field for many years) ultimately led to problems such as premature optimization for the wrong distribution of data.
Nonetheless, I have see independents who came to the field with no background, absorbed the ground knowledge, and made major contributions, but that's absurdly rare compared to PhDs.
The person you are replying to did not say that.
Similar, yes. But, at least to my mind, there's a pretty big jump from "many" to "most". But maybe that's just me. shrug
I have no interest in arguing about the interpretation of that sentence.
Then don't "interpret" anything. The person who wrote that sentence explicitly said "many" and not "most". Barring some evidence to the contrary, the sensible thing to do is take it literally, no interpretation necessary.
Safety is an obvious benefit to this approach, but it also allows you get exposure to more interesting and complex experiments that are more cutting edge and comparable to the kinds of work you'd actually do at a company. These labs have access to equipment and reagents that you cant get anywhere else. From what Ive seen the at home stuff you can do is incredibly limited
This approach also gives you exposure to proper experimental design and technique, which is really hard to learn on your own because biology experiments take so long. Biology experiments take long enough even if you know how to do them
>Don't listen to anyone that tells you that you can't do something because you don't have a PhD.
I definitely don't think getting a PhD automatically makes you some super genius. I've also worked with a fair number of grad students get their PhD that probably shouldn't have just because they'd been in their program long enough and basically got "pushed" out. That said, if OP is coming at the perspective of starting a business and presumably needing to convince investors/clients that he knows what he's doing, it's kind of silly to suggest he doesn't need any PhD's working for him.
Even if whatever job they're doing doesn't really require "PhD-level expertise", hiring a PhD is a fairly easy way to lend yourself some credibility, particularly towards non-technical people who probably put more weight on having a higher degree.
really idiots ? I'd be shocked if PhD were really lacking intelligence that much (even if you used the term as an hyperbole)
Even if you end up managing a lab rather than working in one, you need to develop a sense for how a lab works and what it's like to do an experiment.
"I'm planning to participate in Olympic games against the best athletes of the planet. I plan to buy a few used sneakers of a similar size than my feet and a second hand tennis racket that is not too worned out. I plan to win against people with brand new and tailor-made equipment".
In short. Don't do it unless you know what you are buying. If you know what you are buying, don't do it if you can afford doing otherwise.
In most cases used equipment will be sold because either the lab had been crushed by better equipped competitors, or is obsolete.
Add some evolution and phylogenetic, which with a mathematical background should be straightforward to grasp.
here's my advice: unless you have friends who can set you up with the right VCs and ensure that they will be willing to overlook your lack of experience and IP, don't bother.
you're not going to get up to speed working in the lab on your own in any short amount of time. learning the theoretical stuff that you need to know won't take long, but you probably won't understand how to use the theory to make something novel until you've spent time in the lab. and you won't know how to vet the ideas of people with phds, either.
then there's the elephant in the room: risk. biotech is extremely risky because drug development is difficult even under ideal conditions. making "niche drugs" is even more difficult than making drugs for the mainstream because niche diseases won't have as much of the scientific background already researched when you sit down to try to come up with a useful therapy concept.
if you want to talk in more depth about the skills which are actually needed to get into the field in a scientific or a business capacity, i've advised someone who reached out to me here on HN about that exact topic in the past, and i'm more than happy to discuss it with you via email. check out my profile if you're interested.
To use an analogy, game developers. Plenty of supply because of everyone wants to be game developers. The work is difficult, pay is bad, work-life balance non-existent. Not to mention the economics are brutal. Are individual game developers valuable? Certainly. Are they cheap too? Yes. The problem is structural (big AAA firms as gatekeepers on the high end, tremendous amount of competition on the indie end).
The problem with Bio/Med/Pharma is also structural. Med school supply is capped by forces like professional associations (fancier terms for doctor unions/lobbies), hospital supply is also capped by the similar forces, with perhaps some contributions by the pharma industry. As for pharma, I think enough people has complained about it that it's not worth elaborating here. There has never been a shortage in bio talent or consumer demand. The bottleneck is due regulatory and policy reasons.
HN treats computing and software like how certain groups treats guns. This is the exception not the norm. Most other industries have tremendous oversight/interference by authorities that the move fast break things method is difficult to apply. In practically any other field, the barrier of entry is artificially high and information is locked-in, not open and shared.
Imagine if you create a new Kubernetes load balancer and to get it deployed you need to have it "approved and certified". You pay perhaps 4 figures to the Cloud Native Computing Foundation who is "accredited" by the Association for Computing Machinery to certify software. Sounds ridiculous? This is the way of life for practically everything that is not generic software (embedded automobile/medical/aerospace software is the exception)
Need a leftpad library? Be prepared to discuss licensing for "intellectual property". No fixed pricing on page, a salesperson will contact you and negotiate.
Is a hamster wheel. Your skills are valuable only while you are running. If you stop, your huge time and money investment loses their value gradually, and if you stop for too much time (getting pregnant, suffering an accident or having small kids) you are out of the game. Thus, for many researchers cheap work is better than none.
And there are the stupid artificial constrains, a damocles sword in the shape of a clock. Scientist work is related with Universities schedule. They can expect to be hired mainly at the beginning of the year or in summer, hired for the next year. If you miss the train you will need to wait for another year.
Scientists are expected also by society to produce X discoveries at the interval of age Y and have a limited time for that. This is really idiot. Would be like expecting Leonardo painting the Monna lisa in three years maximum (and exactly between 27 and 29 yo), or stop painting.
And there is also a huge vanity factor. To be associated with an university or big brand even if you just make the coffee there, is good for the ego and help constructing your identity and selling you better later.
None of those have any relationship with what science really is, a method to solve problems, of course
So bring it on I say! Just apply to any mayor classical bio-company. I mean biologists need to become data-scientists and computer scientists more and more, and they can use a lot of help. For example: During my internship in 2003 I did DNA sequencing, I spend all day making a gel and loading it and I read 200 basepairs of DNA of a printed paper to check my results. Today we have an Illumina sequencer in the lab, it produces 60 billion basepairs every couple of days. We are nowhere anymore without computers and computer scientists.
Do you guys allow remote work?
Having a PhD is not essential -- I know many successful VCs, founders and operators without PhDs -- but you absolutely need an appreciation of science. People like to hire PhDs because they have a fundamental knowledge of biology and or chemistry and they have deep experimental experience in a specific domain. Without that experience doing experiments it's hard to really understand the challenges of science and rigor required. That said not all PhDs give you that, and academic science tends to be less rigorous than industry science
Also, developing a drug requires PhD level experience in many domains and no one person can do it all. A neuroscience PhD won't necessarily qualify you to review tox data. You need people who can quickly get up to speed on various technical fields, find experts and have productive conversations with them
You need to understand the drug development process at a basic level. There are lots of articles about this online, here's one I wrote [0]
You need to understand how to evaluate and critique scientific and clinical data. It is easier to start by looking at clinical data. You can learn to analyze this data without a PhD if you spend time with it and ideally have a mentor. Here is a case study I wrote on basic concepts in evaluating clinical data [1]
Evaluating preclinical or scientific data is much harder. In nonhuman studies you are measuring more endpoints with less direct relationship to human disease in more contrived systems. The experiments also tend to be less rigorously designed, executed and documented (at least in academia) so there are all kinds of pitfalls to avoid that you can't really know without experience. This is where a PhD really helps
To start learning this just struggle through papers. Find a paper that interests you and read it in depth. Learn what each experiment and instrument does. Learn what each molecule does. Here's an example I wrote translating a synthetic biology paper into layman studies terms to give you a sense of what goes into reading a paper [2]
If you have a scientist friend who can walk you through papers that speeds up the process by orders of magnitude and you can learn so much
At first read for comprehension. Then read with a critical eye. Why did they do this experiment instead of this other one? Are they missing an important control here? Is this model robust? Are the conclusions they draw stronger that what the data suggest?
Learn how drugs are valued. Valuation is different in biotech than any other sector. Drugs don't have revenue or users for years. A drug can. A worth $10B before FDA approval. Value in biopharma comes from reducing technical risk. I wrote a post about that here [3]. Most biotech founders lack either the science or business knowledge needed. It is easier to learn the business stuff so that can let you add value to a company while learning more about the science
[0] https://www.baybridgebio.com/blog/drug_dev_process.html
[1] https://www.baybridgebio.com/blog/aducanumab-analysis
[2] https://www.baybridgebio.com/blog/synbio-laymans-terms.html
[3] https://www.baybridgebio.com/drug_valuation.html
Get the notion that "biology is a computer that we can fundamentally and totally understand at the level that we understand Church-Turing" out of your head as soon as possible because it is incorrect. Biological systems are complex, they are deeply nonlinear, we do not even come close to understanding the functional behavior of their components (or, indeed, what those components even ARE) the way we can understand transistors or chips or API specs, etc.
The sooner you get used to believing that "I can't prove anything, but we have a pile of mostly not contradictory evidence that suggests that most of the time this idea is a pretty good heuristic and our error bars are reasonable", the better you'll do and the saner you'll remain.
Some recommended worldview reading for you:
The Andy Grove Fallacy: http://blogs.sciencemag.org/pipeline/archives/2007/11/06/and...
Can A Biologist Fix A Radio: https://www.cell.com/cancer-cell/pdf/S1535-6108(02)00133-2.p...
Can A Neuroscientist Understand A Microprocessor https://journals.plos.org/ploscompbiol/article?id=10.1371/jo...
And if you like, I can provide a basically endless stream of papers of the form "we thought X did Y and we knew what X was; it turns out that X actually does Q, it also turns out we don't know why X does anything at all, but when we do X we sometimes get Y so we've been confused for the past 50 years"
Therefore you can't really go and design things form the first principles, since first principles are not really that well known. Of course you can try, and get some successes but that is rare. Add extremely complicated AND nonlinear dependences between the systems you are working with and you may get idea why we still don't have cure for most cancers yet.
I think it's a great misconception to think that people who work with computers work things out from first principles. Dealing with complex systems that they don't understand, and repeatedly plunging into new areas, is exactly why computer people think they can handle things like biology.
It also seems illogical to say "nobody understands biology, therefore you cannot hope to". If nobody understands much, that makes it more likely an outsider can contribute.
The attitude of many responses in this thread reminds me of the culture/class gap I've seen between lawyers and legal IT analysts (one person I worked with had a degree in biology as it happened).
In biology (and other non-hard sciences) the systems quite often behave in non-deterministic way. To be clear I don't claim that this non-deterministic behaviour is inherent to biological systems (although it is when we take the quantum limit), but rather that they are so complex that untangling this complexity to get nice casuality is virtually impossible. Add the complexity and lack of understanding _on top of that_.
> It also seems illogical to say "nobody understands biology, therefore you cannot hope to".
I didn't mean to imply that "nobody understands biology, therefore you cannot hope to". I rather meant to express that (at the current level of our species and tools we have) "biology cannot be understood the same way computers are". IMO of course. Therefore applying the same methodology that you apply to hard sciences (math, phys, cs [, chem?]) may not yield as good results and often doesn't.
> If nobody understands much, that makes it more likely an outsider can contribute.
I can agree that it's easier for outsider to contribute something to biology than physics, mathematics or CS. However, to contribute meaningfully good grasp of concepts and techniques is necessary. Contrarily to math, theoretical or CS in biology it has to be acquired at the front lines of the battles i.e. in the lab. I agree that bioinformatics has made huge leaps in the recent years, but AFAIK nearly all significant new contributions in biology come from the laboratory work not theoretical considerations.
When I did lab work, results pretty much always had to be viewed through the lense of "Did my technique screw up the data?" before you can even start thinking about the research implications.
Not all of the places on that list will have biology labs, but some will! It's a good way to get some experience at the bench without going the degree route.
https://diybio.org/local/
For anybody in/near the Research Triangle Park area of NC, there is Tri-DIY-Bio, a pretty active DIY bio group. http://www.tridiybio.org/
We are hiring in SF and Singapore for informatics roles.
Bonus points for citing our active jobs page: https://www.lucencedx.com/careers/
I don't think you're actually concerned about this.
So don’t compete with bio phds, the money is not worth it. I have studied molec bio and comp science separately and can work in both industries. We talk about 150k vs 100k salary differences. Find an area that interests you like data analytics software in healthcare or something like this and go to a tech company you will thank me.
[1] https://www.biostarhandbook.com/
[2] https://www.biostars.org/
[3] https://biojulia.net/
If you are really serious about starting a biotech company, you will need to get a PhD in an applied or natural science or work at an immature startup with a team of PhDs thats needs programming help and you can hopefully learn the 'scientific' skills you need along the way. If you restrict the space of companies you want to start to be strictly in the bioinformatics space, then you can probably bypass the PhD route, but you'll need to get a job doing that sort of work at a startup. Job descriptions for those roles should tell you what specific skills you would need for that. Also, I would highly recommend becoming good at stats. Thats fundamental to any path you go down, and can be another way for you to provide immediate value to others.