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Isn't R GPLv2? Isn't that incompatible with AGPLv3?
Since R isn't included in RStudio, merely acting as an interface with the R session, I doubt this is an issue at all.
RStudio has server and client components (rdesktop and rsession) and at least on the linux version rsession is dynamically linked to libR.so. R has historically been very lax about policing their binary API's for license violations, though.
This is confusing because R-Studio (with a hyphen) is also a file recovery utility...