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FTA: "though we don't know of anyone else who has been exposed to radiation in the form of a proton beam moving at about the speed of sound"

Do they mean "speed of light"?

hmm.. yes. Otherwise it wouldn't be that different to shooting a jet of hydrogen from a tank at someones head (assuming some would be stripped of their electrons on the way out the tank !).
Note to self: "Keep head out of proton beam".
Note to self: "Keep self out of Soviet Russia".
"Do not look into proton beam with remaining eye."
I would have thought the chamber these beams travel through would have to be kept at vacuum to work -?
They don't really provide details, but generally yes. If you have achieved your desired energy, you might then want to irradiate something in air (remember some of this was used in weapons research). So he could have stuck his head in front of the beam exit, or they might have pulled apart a section of the accelerator, sealed it off, but for some reason the beam was still run and the beam simply passed through the seal.

I'm guessing that he was probably working on one of the beam dumps (not the main accelerating ring), which meant that the beam could have already been accelerated many times around the synchrotron.

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I guess he got bored with the pickle slicer.