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I’m not a mathematician so correct me if I’m wrong, but the patterns that emerge or more the natural result of the plotting method vs revealing anything meaningful about the distribution of primes.
The article explicitly says as much.

> So what’s clear here is that the spirals themselves have nothing to do with prime numbers; a much cleaner and fuller pattern can be seen when we plot all positive integers (as well as zero).

Not a mathematician either but I think some quadratics have a tendency to produce more primes than others. What you are seing is the characteristic of various quadratics when plotted in this way. I plotted something quite simmilar.
shameless self promotion:

i built an "animation framework" in JavaScript around it where you can control and animate several parameters and even record the animation

https://primes.nickyreinert.de/

If you're plotting primes, all the coordinates where you're not plotting are non-prime - so every 2nd coordinate will be blank. As will every 3rd and every 4th, 5th, 10th, 11th. etc etc.

Surely that's where the pattern comes from.