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Cool, another pointless middleman thinking they can control the universe. Exactly why I won't use flat* for anything.
The current wording seems terrible. It sounds like if I bundle an existing app into a flatpak and submit it to flathub (a common practice, see e.g. unofficial flatpaks for Discord, MS Teams, etc), and the app happens to have some AI-generated code, my submission might be rejected, even though the AI-generated code had nothing to do with the flatpak manifest and won't directly appear on flathub at all.