I built a service called Invoiced (http://invoiced.com) that has Stripe baked in from the beginning. Your customers pay through a secure form we generate and the receipt is generated/e-mailed to them afterwards.
If you want any more info, you can reach me at jared [at] invoiced.com.
EDIT: Should also mention you can make invoices without making an account at http://invoice-generator.com if you just invoice occasionally.
I use the app that I built for this purpose (http://duetapp.com). It has stripe and paypal built in. Customers can download a pdf copy of the paid invoice for their records.
Xero is great. It integrates well with stripe. They're also a full-featured accounting app (more so than Freshbooks which is only invoicing and expense tracking, and they charge as much as Xero).
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[ 2.0 ms ] story [ 20.2 ms ] thread[0] http://www.freshbooks.com
[1] http://community.freshbooks.com/addons/view/stripe/
If you want any more info, you can reach me at jared [at] invoiced.com.
EDIT: Should also mention you can make invoices without making an account at http://invoice-generator.com if you just invoice occasionally.
http://xero.com