Is the time required to upload data to the cloud ever a problem with these solutions? Of course, it depends on what you are trying to do, but suppose you were working with thousands of genomes?
Interesting - wouldn't you need to have access to "the rest" of the genomes that you are comparing against? In other words, wouldn't you need to keep that ~100 GB from the newly sequenced genome in temporary storage…
How long does it take (and with what computational bandwidth) to produce a 125MB variant file from 200GB raw sequence data?
Is the time required to upload data to the cloud ever a problem with these solutions? Of course, it depends on what you are trying to do, but suppose you were working with thousands of genomes?
Interesting - wouldn't you need to have access to "the rest" of the genomes that you are comparing against? In other words, wouldn't you need to keep that ~100 GB from the newly sequenced genome in temporary storage…
How long does it take (and with what computational bandwidth) to produce a 125MB variant file from 200GB raw sequence data?